Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0328KEGG: cco:CCC13826_0034 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Coch_0329
KEGG: amr:AM1_4013 hypothetical protein.
       0.773
Coch_0330
KEGG: fjo:Fjoh_0739 hypothetical protein.
       0.773
Coch_0513
KEGG: gfo:GFO_0898 conserved hypothetical protein, secreted.
  
     0.518
Coch_0331
Hypothetical protein; KEGG: gfo:GFO_2503 thiol-disulfide oxidoreductase.
       0.501
Coch_0327
PFAM: Ferritin Dps family protein; KEGG: fjo:Fjoh_4766 ferritin, Dps family protein; Belongs to the Dps family.
       0.480
Coch_0635
KEGG: hypothetical protein.
 
     0.460
Coch_0936
KEGG: gfo:GFO_3124 conserved hypothetical protein, secreted.
  
     0.414
Coch_1272
KEGG: gfo:GFO_2570 hypothetical protein.
  
     0.409
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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