Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0329KEGG: amr:AM1_4013 hypothetical protein. (762 aa)    
Predicted Functional Partners:
Coch_0255
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mpo:Mpop_1512 ATPase associated with various cellular activities AAA_5.
 
  
 0.872
Coch_0406
PFAM: VWA containing CoxE family protein; KEGG: ecm:EcSMS35_3514 VWA domain protein.
     0.833
Coch_2017
PFAM: zinc finger SWIM domain protein; KEGG: bth:BT_3906 hypothetical protein.
 
     0.808
Coch_0328
KEGG: cco:CCC13826_0034 hypothetical protein.
       0.773
Coch_0330
KEGG: fjo:Fjoh_0739 hypothetical protein.
       0.773
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.741
Coch_2006
PFAM: conserved hypothetical protein; KEGG: cbk:CLL_A1661 hypothetical protein.
  
     0.599
Coch_0331
Hypothetical protein; KEGG: gfo:GFO_2503 thiol-disulfide oxidoreductase.
  
    0.514
Coch_0327
PFAM: Ferritin Dps family protein; KEGG: fjo:Fjoh_4766 ferritin, Dps family protein; Belongs to the Dps family.
       0.486
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.461
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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