Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0340PFAM: Smr protein/MutS2; KEGG: gfo:GFO_1881 Smr domain protein-possibly involved in DNA repair. (188 aa)    
Predicted Functional Partners:
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.773
Coch_1828
KEGG: gfo:GFO_0407 hypothetical protein.
  
     0.681
Coch_0212
KEGG: fps:FP0732 hypothetical protein.
  
     0.666
Coch_0342
KEGG: bfs:BF2755 hypothetical protein.
       0.636
Coch_0105
KEGG: fps:FP0106 hypothetical protein.
 
     0.633
Coch_0339
Hypothetical protein.
       0.623
Coch_0461
PFAM: protein of unknown function DUF450; KEGG: fps:FP1054 hypothetical protein.
  
     0.612
Coch_2189
KEGG: fjo:Fjoh_2926 hypothetical protein.
 
     0.604
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
 
     0.602
Coch_1386
KEGG: fjo:Fjoh_2917 hypothetical protein.
  
     0.600
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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