Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
Coch_0342KEGG: bfs:BF2755 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Coch_1818
KEGG: bvu:BVU_2508 hypothetical protein.
  
     0.762
Coch_1819
KEGG: bvu:BVU_2507 putative lipoprotein.
  
     0.762
Coch_1820
PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_2506 putative outer membrane receptor protein.
  
     0.758
Coch_1450
PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: chu:CHU_3533 two-component sensor histidine kinase.
 
    0.694
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
   0.650
Coch_0145
PFAM: integrase family protein; KEGG: pgn:PGN_0094 putative bacteriophage integrase; Belongs to the 'phage' integrase family.
  
     0.643
Coch_0565
Hypothetical protein.
  
     0.643
Coch_0340
PFAM: Smr protein/MutS2; KEGG: gfo:GFO_1881 Smr domain protein-possibly involved in DNA repair.
       0.636
Coch_1833
PFAM: protein of unknown function DUF6 transmembrane; KEGG: abu:Abu_1556 hypothetical protein.
  
    0.636
Coch_0344
KEGG: bfs:BF2755 hypothetical protein.
 
    
0.607
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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