Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0359PFAM: peptidase M12B ADAM/reprolysin; KEGG: hch:HCH_04317 PPE repeat-containing protein. (1008 aa)    
Predicted Functional Partners:
Coch_0360
PFAM: Zeta toxin family protein; KEGG: bfs:pBF9343.31c hypothetical protein.
 
     0.815
Coch_0361
KEGG: bfs:pBF9343.32c hypothetical protein.
       0.773
Coch_0362
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_1399 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
       0.773
Coch_0358
PFAM: peptidase M12B ADAM/reprolysin; KEGG: hau:Haur_1970 hypothetical protein.
 
    
0.674
Coch_0357
KEGG: noc:Noc_0728 hypothetical protein.
 
    
0.578
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
     0.469
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.430
Coch_0356
PFAM: Colicin V production protein; KEGG: gfo:GFO_3421 colicin V production protein.
       0.430
Coch_1447
PFAM: Sporulation domain protein; KEGG: fps:FP0015 putative cell surface protein precursor SprD.
  
     0.430
Coch_1062
KEGG: fjo:Fjoh_1140 hypothetical protein.
  
     0.413
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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