STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0367KEGG: fps:FP1171 hypothetical protein. (2478 aa)    
Predicted Functional Partners:
Coch_1699
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
   0.687
Coch_1700
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
   0.658
Coch_1698
KEGG: fjo:Fjoh_3951 hypothetical protein.
  
     0.580
Coch_1705
PFAM: OmpA/MotB domain protein; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
 
   0.518
Coch_0655
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: chu:CHU_1881 transcriptional regulator.
  
     0.479
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
   0.463
Coch_0068
KEGG: gfo:GFO_1858 conserved hypothetical protein, secreted.
  
 
   0.430
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
   0.428
Coch_0756
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_2892 gliding motility protein GldJ.
  
    0.410
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
Server load: high (84%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.