Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0367KEGG: fps:FP1171 hypothetical protein. (2478 aa)    
Predicted Functional Partners:
Coch_1699
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
   0.601
Coch_1698
KEGG: fjo:Fjoh_3951 hypothetical protein.
  
     0.580
Coch_1700
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
   0.564
Coch_0655
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: chu:CHU_1881 transcriptional regulator.
  
     0.479
Coch_0756
PFAM: protein of unknown function DUF323; KEGG: gfo:GFO_2892 gliding motility protein GldJ.
  
    0.407
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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