Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0372PFAM: protein of unknown function DUF1573; KEGG: gfo:GFO_2932 secreted protein containing DUF1573. (122 aa)    
Predicted Functional Partners:
Coch_0205
KEGG: gfo:GFO_2272 hypothetical protein.
  
     0.553
Coch_0373
KEGG: fps:FP2423 hypothetical protein.
       0.538
Coch_2172
KEGG: gfo:GFO_3478 hypothetical protein.
  
     0.537
Coch_1557
TIGRFAM: ribosomal subunit interface protein; KEGG: fjo:Fjoh_1935 putative sigma 54 modulation protein/ribosomal protein S30EA.
  
     0.533
Coch_0380
PFAM: DoxX family protein; KEGG: gfo:GFO_0431 conserved hypothetical protein, membrane.
  
     0.499
Coch_1405
TIGRFAM: rod shape-determining protein MreD; KEGG: gfo:GFO_2960 conserved hypothetical protein, membrane.
  
     0.483
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.473
Coch_1748
KEGG: fps:FP0326 PorT protein.
 
     0.464
Coch_1698
KEGG: fjo:Fjoh_3951 hypothetical protein.
  
     0.460
Coch_0434
KEGG: fps:FP1174 hypothetical protein.
  
     0.443
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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