Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0380PFAM: DoxX family protein; KEGG: gfo:GFO_0431 conserved hypothetical protein, membrane. (360 aa)    
Predicted Functional Partners:
Coch_0379
PFAM: protein of unknown function DUF1599; KEGG: gfo:GFO_0430 protein containing DUF1599.
 
     0.919
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
      0.899
Coch_1557
TIGRFAM: ribosomal subunit interface protein; KEGG: fjo:Fjoh_1935 putative sigma 54 modulation protein/ribosomal protein S30EA.
  
     0.731
Coch_1626
KEGG: fps:FP1612 hypothetical protein.
  
     0.700
Coch_0207
PFAM: protein of unknown function DUF177; KEGG: gfo:GFO_3340 protein containing DUF177.
  
     0.697
Coch_1064
KEGG: gfo:GFO_2782 gliding motility protein GldB.
  
     0.661
Coch_1548
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: fps:FP1402 hypothetical protein.
  
     0.660
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
 
    0.641
Coch_0808
KEGG: gfo:GFO_3014 gliding motility protein GldL.
  
     0.639
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.638
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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