Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Coch_0385TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pdi:BDI_3353 periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (409 aa)    
Predicted Functional Partners:
Coch_0384
PFAM: outer membrane efflux protein; KEGG: bth:BT_1212 outer membrane efflux protein.
 
 0.968
Coch_0386
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_3354 putative ABC transporter ATP- binding protein.
 
 
 0.966
Coch_0390
PFAM: protein of unknown function DUF214; KEGG: bfs:BF1933 putative permease component of ABC transporter.
 
 
 0.901
Coch_0147
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein; KEGG: chu:CHU_1512 cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.854
Coch_1555
PFAM: protein of unknown function DUF214; KEGG: fjo:Fjoh_1460 hypothetical protein.
 
 
 0.816
Coch_1780
PFAM: protein of unknown function DUF214; KEGG: fps:FP2022 ABC transporter permease.
 
 
 0.797
Coch_1941
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_1671 outer membrane efflux protein.
 
 0.765
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.714
Coch_0319
TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: gfo:GFO_3396 AcrB/AcrD/AcrF family membrane transport protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.700
Coch_0124
KEGG: pdi:BDI_1337 outer membrane efflux protein.
  
 0.699
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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