STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0389KEGG: ent:Ent638_2117 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Coch_0388
PFAM: Abortive infection protein; KEGG: mba:Mbar_A3063 hypothetical protein.
  
    0.674
Coch_0092
PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase.
     
 0.665
Coch_0387
PFAM: regulatory protein TetR; KEGG: efa:EF2203 TetR family transcriptional regulator.
  
    0.640
Coch_1135
Hypothetical protein; KEGG: gfo:GFO_0918 erythromycin esterase type II.
   
    0.639
Coch_1285
Alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.
  
 
 0.476
Coch_0390
PFAM: protein of unknown function DUF214; KEGG: bfs:BF1933 putative permease component of ABC transporter.
  
    0.444
Coch_0386
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_3354 putative ABC transporter ATP- binding protein.
  
    0.430
Coch_0385
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pdi:BDI_3353 periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.421
Coch_0392
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: chu:CHU_2576 two-component sensor histidine kinase.
       0.404
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.