STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0390PFAM: protein of unknown function DUF214; KEGG: bfs:BF1933 putative permease component of ABC transporter. (406 aa)    
Predicted Functional Partners:
Coch_0386
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_3354 putative ABC transporter ATP- binding protein.
 
 0.991
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 0.987
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.957
Coch_0385
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pdi:BDI_3353 periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.916
Coch_0384
PFAM: outer membrane efflux protein; KEGG: bth:BT_1212 outer membrane efflux protein.
 
 
 0.808
Coch_1660
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_2544 ABC-type transporter ATP-binding protein.
 
      0.805
Coch_0463
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_1672 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.726
Coch_0392
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: chu:CHU_2576 two-component sensor histidine kinase.
 
     0.712
Coch_1498
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP1379 ABC transporter ATPase.
 
      0.673
Coch_0391
Hypothetical protein.
       0.648
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.