Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0396KEGG: fjo:Fjoh_0737 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Coch_2135
KEGG: gfo:GFO_1635 hypothetical protein.
  
     0.603
Coch_0833
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: gfo:GFO_3311 LysE type amino acid translocator.
  
     0.561
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
  
     0.546
Coch_1116
KEGG: fjo:Fjoh_1694 CBS domain-containing protein.
  
     0.545
Coch_1875
KEGG: fjo:Fjoh_0451 hypothetical protein.
  
     0.486
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
  
     0.457
Coch_0207
PFAM: protein of unknown function DUF177; KEGG: gfo:GFO_3340 protein containing DUF177.
  
     0.449
Coch_0807
KEGG: gfo:GFO_3013 gliding motility protein GldM.
  
     0.440
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
  
     0.435
Coch_1437
KEGG: gfo:GFO_2916 hypothetical protein.
  
     0.424
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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