Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Coch_0400TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cch:Cag_1143 cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (327 aa)    
Predicted Functional Partners:
Coch_0399
PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: fjo:Fjoh_3187 alkaline phosphatase; Belongs to the alkaline phosphatase family.
       0.678
mdh
Lactate/malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.659
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.636
Coch_0397
KEGG: fjo:Fjoh_0739 hypothetical protein.
       0.625
Coch_0243
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: gfo:GFO_1184 copper-translocating P-type ATPase.
  
 
 0.515
Coch_0401
PFAM: glycosyl transferase family 4; KEGG: chu:CHU_0167 glycosyltransferase/acetylmuramyl pentapeptide phosphotransferase.
  
    0.493
Coch_0976
PFAM: protein of unknown function DUF502; KEGG: aas:Aasi_0164 protein of unknown function DUF502.
  
     0.465
Coch_0402
PFAM: sugar transferase; KEGG: scl:sce3584 glycosyltransferase.
       0.423
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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