Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Coch_0404 | Coch_0405 | Dipeptidyl-peptidase 7; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2066 hypothetical protein; Belongs to the LOG family. | 0.642 |
Coch_0405 | Coch_0404 | PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2066 hypothetical protein; Belongs to the LOG family. | Dipeptidyl-peptidase 7; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | 0.642 |
Coch_0405 | Coch_1205 | PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2066 hypothetical protein; Belongs to the LOG family. | PFAM: ribonucleotide reductase; KEGG: fjo:Fjoh_4066 ribonucleotide reductase. | 0.479 |
Coch_0405 | Coch_1963 | PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2066 hypothetical protein; Belongs to the LOG family. | Ribonucleoside-diphosphate reductase, alpha chain; KEGG: fjo:Fjoh_4065 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; PFAM: ribonucleotide reductase large subunit. | 0.434 |
Coch_1205 | Coch_0405 | PFAM: ribonucleotide reductase; KEGG: fjo:Fjoh_4066 ribonucleotide reductase. | PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2066 hypothetical protein; Belongs to the LOG family. | 0.479 |
Coch_1205 | Coch_1963 | PFAM: ribonucleotide reductase; KEGG: fjo:Fjoh_4066 ribonucleotide reductase. | Ribonucleoside-diphosphate reductase, alpha chain; KEGG: fjo:Fjoh_4065 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; PFAM: ribonucleotide reductase large subunit. | 0.999 |
Coch_1963 | Coch_0405 | Ribonucleoside-diphosphate reductase, alpha chain; KEGG: fjo:Fjoh_4065 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; PFAM: ribonucleotide reductase large subunit. | PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2066 hypothetical protein; Belongs to the LOG family. | 0.434 |
Coch_1963 | Coch_1205 | Ribonucleoside-diphosphate reductase, alpha chain; KEGG: fjo:Fjoh_4065 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha chain; PFAM: ribonucleotide reductase large subunit. | PFAM: ribonucleotide reductase; KEGG: fjo:Fjoh_4066 ribonucleotide reductase. | 0.999 |