Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0442KEGG: fjo:Fjoh_3390 hypothetical protein. (543 aa)    
Predicted Functional Partners:
Coch_0444
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3311 hypothetical protein.
 
     0.795
Coch_0443
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3310 hypothetical protein.
 
     0.746
Coch_0445
Glucan endo-1,6-beta-glucosidase; PFAM: glycoside hydrolase family 30; KEGG: pdi:BDI_1787 beta-glycosidase; Belongs to the glycosyl hydrolase 30 family.
 
     0.636
Coch_0620
KEGG: pdi:BDI_3402 hypothetical protein.
 
     0.521
Coch_0441
KEGG: fjo:Fjoh_2475 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; SMART: DNA gyrase/topoisomerase IV subunit A.
       0.432
Coch_0931
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4433 RagB/SusD domain-containing protein.
  
     0.422
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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