Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0449PFAM: phenylalanine/histidine ammonia-lyase; KEGG: fjo:Fjoh_2576 histidine ammonia-lyase. (462 aa)    
Predicted Functional Partners:
Coch_1047
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: fjo:Fjoh_1109 histidine ammonia-lyase.
  
  
 
0.926
Coch_0450
6-phosphogluconolactonase; KEGG: bth:BT_4399 hypothetical protein.
       0.594
Coch_1744
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: fjo:Fjoh_1852 hypothetical protein.
  
  
 0.579
Coch_2044
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: gfo:GFO_3624 agmatinase; Belongs to the arginase family.
  
  
 0.579
fhs
PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: cth:Cthe_2399 formate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.545
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
       0.541
Coch_0063
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bfr:BF1734 beta-N-acetylhexosaminidase.
   
    0.495
Coch_0201
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bth:BT_4681 beta-hexosaminidase precursor.
   
    0.495
Coch_1198
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase-like; coagulation factor 5/8 type domain protein; KEGG: fjo:Fjoh_2039 beta-N-acetylhexosaminidase.
   
    0.495
Coch_1350
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase-like; KEGG: bvu:BVU_4138 beta-N-acetylhexosaminidase.
   
    0.495
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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