Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0464KEGG: gfo:GFO_0531 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Coch_2172
KEGG: gfo:GFO_3478 hypothetical protein.
  
     0.764
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
  
     0.621
Coch_2058
TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: gfo:GFO_2283 tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.589
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
 
     0.572
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
  
     0.570
Coch_0463
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_1672 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.550
Coch_2180
Hypothetical protein; KEGG: fjo:Fjoh_2098 TonB-dependent receptor.
  
     0.546
Coch_1543
PFAM: protein of unknown function DUF164; KEGG: fjo:Fjoh_0234 hypothetical protein.
  
     0.495
Coch_1359
PFAM: outer membrane chaperone Skp (OmpH); KEGG: gfo:GFO_0210 OmpH family outer membrane protein.
  
     0.488
Coch_1564
Hypothetical protein; KEGG: gfo:GFO_0804 conserved hypothetical protein, secreted.
  
     0.482
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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