Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0475PFAM: metallophosphoesterase; KEGG: fjo:Fjoh_0884 metallophosphoesterase. (240 aa)    
Predicted Functional Partners:
Coch_0474
Hypothetical protein.
       0.625
Coch_0407
KEGG: gfo:GFO_0092 secreted protein.
  
     0.585
Coch_2119
KEGG: fjo:Fjoh_1589 hypothetical protein.
  
     0.522
Coch_1775
KEGG: fjo:Fjoh_0264 hypothetical protein.
  
     0.488
Coch_1852
KEGG: fjo:Fjoh_4924 hypothetical protein.
  
     0.464
Coch_1224
KEGG: gfo:GFO_0996 hypothetical protein.
  
     0.453
Coch_1874
KEGG: fps:FP0585 hypothetical protein.
  
     0.438
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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