Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0478KEGG: ajs:Ajs_1864 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Coch_0476
PFAM: DoxX family protein; KEGG: maq:Maqu_0059 DoxX family protein.
 
     0.825
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.746
Coch_0300
KEGG: bth:BT_2504 hypothetical protein.
  
     0.701
Coch_0600
KEGG: chu:CHU_2486 hypothetical protein.
  
     0.682
Coch_1368
KEGG: ctc:CTC01162 membrane associated protein.
  
     0.633
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
  
     0.568
Coch_1336
PFAM: Hyalin; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
     0.529
Coch_1791
KEGG: fjo:Fjoh_3471 hypothetical protein.
  
     0.529
Coch_0033
PFAM: Hyalin; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
     0.517
Coch_0479
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.493
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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