Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0481KEGG: fps:FP2258 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Coch_0480
PFAM: glycosyl transferase family 2; KEGG: fps:FP2257 glycosyl transferase, group 2 family protein.
 
     0.862
Coch_0548
KEGG: fps:FP2280 dialkylrecorsinol condensing enzyme DarA.
 
     0.779
Coch_0544
KEGG: fps:FP2276 hypothetical protein.
 
     0.772
Coch_0586
KEGG: fps:FP2275 hypothetical protein.
 
     0.751
Coch_1765
Dehydratase; KEGG: fps:FP2259 dehydratase.
 
     0.748
Coch_0547
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: fps:FP2279 3-oxoacyl-(acyl carrier protein) synthase III.
 
     0.746
Coch_0545
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: fps:FP2277 flexirubin-type pigment biosynthesis acyl carrier protein DarC1.
 
     0.740
Coch_0383
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: fjo:Fjoh_1078 phospholipid/glycerol acyltransferase.
 
     0.733
Coch_0742
KEGG: fjo:Fjoh_1090 hypothetical protein.
 
     0.720
Coch_1418
PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase; Tetratricopeptide TPR_2 repeat protein; KEGG: fjo:Fjoh_1076 peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
 
     0.708
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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