Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Coch_0484PFAM: nitroreductase; KEGG: fjo:Fjoh_0114 nitroreductase. (200 aa)    
Predicted Functional Partners:
Coch_0097
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lbf:LBF_3007 lactoylglutathione-like lyase.
  
  
 0.558
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.533
Coch_0112
PFAM: ABC-2 type transporter; KEGG: pdi:BDI_1332 putative ABC transport system, membrane protein.
  
    0.527
Coch_0113
PFAM: ABC-2 type transporter; KEGG: bfs:BF2649 putative ABC transport system, membrane protein.
  
    0.527
Coch_0131
PFAM: ABC-2 type transporter; KEGG: fjo:Fjoh_1095 ABC-2 type transporter.
  
    0.527
Coch_0596
PFAM: ABC-2 type transporter; KEGG: bvu:BVU_0262 putative transport-related membrane protein.
  
    0.527
Coch_0597
KEGG: pdi:BDI_0142 hypothetical protein.
  
    0.527
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.509
Coch_0456
PFAM: nitroreductase; KEGG: pmu:PM0161 hypothetical protein.
  
     0.455
Coch_0485
PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce7786 putative membrane protein/putative transporter.
  
    0.433
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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