Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0519PFAM: alpha/beta hydrolase fold; KEGG: gfo:GFO_0218 alpha/beta fold hydrolase. (256 aa)    
Predicted Functional Partners:
Coch_0520
PFAM: membrane protein of unknown function; KEGG: fjo:Fjoh_1700 membrane protein of unknown function.
  
    0.808
Coch_0518
Cellulase; PFAM: glycoside hydrolase family 6; KEGG: mbb:BCG_0093 putative cellulase celA1 (endoglucanase); Belongs to the glycosyl hydrolase family 6.
       0.714
Coch_0730
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: fjo:Fjoh_1932 acyl-CoA dehydrogenase domain- containing protein.
   
 0.477
Coch_0920
PFAM: FAD dependent oxidoreductase; KEGG: fjo:Fjoh_1858 FAD dependent oxidoreductase.
  
 
 0.436
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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