Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0522KEGG: gfo:GFO_1825 hypothetical protein. (220 aa)    
Predicted Functional Partners:
Coch_0523
KEGG: fjo:Fjoh_4516 hypothetical protein.
 
     0.863
Coch_0775
KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
  
     0.774
Coch_0189
TIGRFAM: TonB family protein; KEGG: gfo:GFO_0186 hypothetical protein.
  
     0.770
Coch_0259
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0091 hypothetical protein.
  
     0.769
Coch_0260
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0090 hypothetical protein.
  
     0.769
Coch_0982
KEGG: gfo:GFO_3292 hypothetical protein.
  
     0.769
Coch_0524
KEGG: fps:FP0889 hypothetical protein.
       0.762
Coch_0231
KEGG: gfo:GFO_2700 membrane or secreted protein.
  
     0.700
Coch_0521
KEGG: fps:FP0982 ATP-dependent exodeoxyribonuclease.
 
     0.690
Coch_0261
KEGG: gfo:GFO_0089 membrane protein.
  
     0.685
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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