Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0551PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: gfo:GFO_2543 conserved hypothetical protein, secreted. (1001 aa)    
Predicted Functional Partners:
Coch_0552
KEGG: fjo:Fjoh_2248 TonB-dependent receptor.
 
   
 0.916
Coch_1699
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
 
 0.872
Coch_1700
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: fps:FP1169 OmpA family outer membrane protein.
 
 
 0.857
Coch_1594
PFAM: OstA family protein; KEGG: fps:FP1772 hypothetical protein.
 
   
 0.784
Coch_1705
PFAM: OmpA/MotB domain protein; KEGG: hypothetical protein; K03640 peptidoglycan- associated lipoprotein.
  
 
 0.759
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 
 0.758
Coch_1978
Outer membrane transport energization protein TonB; KEGG: gfo:GFO_2900 hypothetical protein; TC 2.C.1.1.1.
 
   
 0.752
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
 
  
 0.706
Coch_0418
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: fjo:Fjoh_1415 PpiC-type peptidyl-prolyl cis- trans isomerase.
 
   0.698
Coch_0807
KEGG: gfo:GFO_3013 gliding motility protein GldM.
  
     0.691
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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