Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0565Hypothetical protein. (128 aa)    
Predicted Functional Partners:
Coch_0564
KEGG: cth:Cthe_2202 hypothetical protein.
 
     0.699
Coch_0342
KEGG: bfs:BF2755 hypothetical protein.
  
     0.643
Coch_0343
KEGG: fjo:Fjoh_0107 hypothetical protein.
  
     0.622
Coch_0344
KEGG: bfs:BF2755 hypothetical protein.
  
     0.593
Coch_1787
KEGG: asa:ASA_1832 hypothetical protein.
  
     0.584
Coch_1272
KEGG: gfo:GFO_2570 hypothetical protein.
  
     0.577
Coch_1558
PFAM: OmpA/MotB domain protein; KEGG: fjo:Fjoh_3415 OmpA/MotB domain-containing protein.
  
     0.575
Coch_1820
PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_2506 putative outer membrane receptor protein.
  
     0.541
Coch_1818
KEGG: bvu:BVU_2508 hypothetical protein.
  
     0.532
Coch_1009
PFAM: Glycoside hydrolase family 42 domain protein; KEGG: cma:Cmaq_0080 glycoside hydrolase family 42 protein.
  
     0.531
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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