Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Coch_0577Hypothetical protein; KEGG: tde:TDE0206 surface antigen, putative. (229 aa)    
Predicted Functional Partners:
Coch_0219
KEGG: pgi:PG1685 hypothetical protein.
  
     0.709
Coch_0576
PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: fjo:Fjoh_1169 hypothetical protein.
       0.618
Coch_0578
KEGG: fjo:Fjoh_1168 TonB-dependent receptor.
 
     0.581
Coch_1251
Flavomodulin; KEGG: fps:FP0097 flavomodulin.
  
     0.519
Coch_1181
Flavomodulin; KEGG: fps:FP0097 flavomodulin.
  
     0.498
Coch_1947
PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; DEAD-like helicases; KEGG: pmo:Pmob_1535 helicase domain-containing protein.
 
     0.412
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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