Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
Coch_0597KEGG: pdi:BDI_0142 hypothetical protein. (383 aa)    
Predicted Functional Partners:
Coch_0604
PFAM: secretion protein HlyD family protein; KEGG: bth:BT_3904 hypothetical protein.
 
  
 0.842
Coch_0596
PFAM: ABC-2 type transporter; KEGG: bvu:BVU_0262 putative transport-related membrane protein.
 
    
0.837
Coch_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_1314 ABC transporter-related protein.
 
  
 0.718
Coch_0598
KEGG: cco:CCC13826_1473 hypothetical protein.
       0.693
Coch_0599
Hypothetical protein.
       0.693
Coch_0605
PFAM: outer membrane efflux protein; KEGG: bvu:BVU_3577 hypothetical protein.
 
     0.667
Coch_0115
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_1335 putative ABC transporter ATP- binding protein.
 
  
 0.661
Coch_0123
KEGG: bth:BT_0561 hypothetical protein.
 
  
 0.579
Coch_0600
KEGG: chu:CHU_2486 hypothetical protein.
       0.535
Coch_0456
PFAM: nitroreductase; KEGG: pmu:PM0161 hypothetical protein.
  
    0.527
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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