Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0601PFAM: protein of unknown function DUF419; KEGG: gfo:GFO_0065 protein containing DUF419. (117 aa)    
Predicted Functional Partners:
Coch_0602
Hypothetical protein.
       0.773
Coch_0600
KEGG: chu:CHU_2486 hypothetical protein.
       0.576
Coch_0598
KEGG: cco:CCC13826_1473 hypothetical protein.
       0.450
Coch_0599
Hypothetical protein.
       0.450
Coch_0603
PFAM: GCN5-related N-acetyltransferase; KEGG: spd:SPD_1592 acetyltransferase, GNAT family protein.
       0.425
Coch_0604
PFAM: secretion protein HlyD family protein; KEGG: bth:BT_3904 hypothetical protein.
       0.421
Coch_0596
PFAM: ABC-2 type transporter; KEGG: bvu:BVU_0262 putative transport-related membrane protein.
       0.411
Coch_0597
KEGG: pdi:BDI_0142 hypothetical protein.
       0.411
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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