Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0604PFAM: secretion protein HlyD family protein; KEGG: bth:BT_3904 hypothetical protein. (326 aa)    
Predicted Functional Partners:
Coch_0605
PFAM: outer membrane efflux protein; KEGG: bvu:BVU_3577 hypothetical protein.
 
 
 0.918
Coch_0596
PFAM: ABC-2 type transporter; KEGG: bvu:BVU_0262 putative transport-related membrane protein.
 
  
 0.842
Coch_0597
KEGG: pdi:BDI_0142 hypothetical protein.
 
  
 0.842
Coch_0603
PFAM: GCN5-related N-acetyltransferase; KEGG: spd:SPD_1592 acetyltransferase, GNAT family protein.
       0.773
Coch_0390
PFAM: protein of unknown function DUF214; KEGG: bfs:BF1933 putative permease component of ABC transporter.
 
  
 0.617
Coch_0147
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; outer membrane efflux protein; KEGG: chu:CHU_1512 cation efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.614
Coch_0291
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gfo:GFO_3395 OprM-like outer membrane efflux protein.
 
 
 0.592
Coch_1555
PFAM: protein of unknown function DUF214; KEGG: fjo:Fjoh_1460 hypothetical protein.
  
  
 0.552
Coch_1780
PFAM: protein of unknown function DUF214; KEGG: fps:FP2022 ABC transporter permease.
  
  
 0.552
Coch_2173
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_1266 outer membrane efflux protein.
  
 
 0.540
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.