Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Coch_0607PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase. (249 aa)    
Predicted Functional Partners:
Coch_1454
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.970
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.918
Coch_1477
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: fps:FP0042 uroporphyrinogen-III synthase.
     
  0.900
Coch_0205
KEGG: gfo:GFO_2272 hypothetical protein.
  
     0.746
Coch_0085
KEGG: fjo:Fjoh_0132 hypothetical protein.
  
     0.743
Coch_0608
KEGG: fps:FP0181 hypothetical protein.
       0.728
Coch_0612
PFAM: protein of unknown function DUF721; KEGG: fjo:Fjoh_4977 hypothetical protein.
 
     0.718
Coch_0752
PFAM: GH3 auxin-responsive promoter; KEGG: fjo:Fjoh_1713 GH3 auxin-responsive promoter.
  
     0.718
Coch_1557
TIGRFAM: ribosomal subunit interface protein; KEGG: fjo:Fjoh_1935 putative sigma 54 modulation protein/ribosomal protein S30EA.
 
     0.716
Coch_2172
KEGG: gfo:GFO_3478 hypothetical protein.
  
     0.712
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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