Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0609KEGG: fjo:Fjoh_0552 hypothetical protein. (126 aa)    
Predicted Functional Partners:
Coch_0608
KEGG: fps:FP0181 hypothetical protein.
 
     0.847
Coch_0610
KEGG: fjo:Fjoh_0553 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase.
       0.816
Coch_0611
PFAM: GCN5-related N-acetyltransferase; KEGG: fjo:Fjoh_3310 GCN5-related N- acetyltransferase.
  
    0.773
Coch_0612
PFAM: protein of unknown function DUF721; KEGG: fjo:Fjoh_4977 hypothetical protein.
       0.773
Coch_1775
KEGG: fjo:Fjoh_0264 hypothetical protein.
  
     0.754
Coch_2026
KEGG: fjo:Fjoh_1216 hypothetical protein.
  
     0.706
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
       0.704
Coch_1878
KEGG: fjo:Fjoh_2510 hypothetical protein.
  
     0.692
Coch_2119
KEGG: fjo:Fjoh_1589 hypothetical protein.
  
     0.692
Coch_1505
KEGG: gfo:GFO_3546 hypothetical protein.
  
     0.670
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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