Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0612PFAM: protein of unknown function DUF721; KEGG: fjo:Fjoh_4977 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Coch_0610
KEGG: fjo:Fjoh_0553 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase.
       0.774
Coch_0609
KEGG: fjo:Fjoh_0552 hypothetical protein.
       0.773
Coch_0611
PFAM: GCN5-related N-acetyltransferase; KEGG: fjo:Fjoh_3310 GCN5-related N- acetyltransferase.
       0.773
Coch_0608
KEGG: fps:FP0181 hypothetical protein.
       0.752
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
 
     0.718
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.608
Coch_1405
TIGRFAM: rod shape-determining protein MreD; KEGG: gfo:GFO_2960 conserved hypothetical protein, membrane.
  
     0.553
Coch_0326
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0213 TPR repeat-containing protein.
 
     0.518
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.501
Coch_0729
KEGG: fps:FP1192 hypothetical protein.
  
     0.492
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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