Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0618Hypothetical protein; KEGG: cjd:JJD26997_0805 surface-exposed lipoprotein. (377 aa)    
Predicted Functional Partners:
Coch_0617
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: fjo:Fjoh_0596 putative 6-pyruvoyl tetrahydropterin synthase.
       0.757
Coch_0615
KEGG: rce:RC1_2383 hypothetical protein.
       0.460
Coch_0616
Hypothetical protein.
       0.460
Coch_0619
PFAM: putative esterase; KEGG: pdi:BDI_3403 hypothetical protein.
       0.439
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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