Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0622KEGG: gfo:GFO_3629 protein containing mevalonate and galactokinase signatures. (331 aa)    
Predicted Functional Partners:
Coch_1037
TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; KEGG: fps:FP2341 hydroxymethylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.
 
 0.979
Coch_0497
PFAM: GHMP kinase; KEGG: fjo:Fjoh_1389 GHMP kinase.
 
  
 0.934
Coch_2073
KEGG: fjo:Fjoh_1417 hypothetical protein.
 
     0.807
Coch_2148
KEGG: fps:FP0664 hypothetical protein.
  
     0.740
Coch_0806
KEGG: gfo:GFO_3012 gliding motility protein GldO.
  
     0.700
Coch_1969
KEGG: gfo:GFO_0515 hypothetical protein.
  
     0.699
Coch_1932
KEGG: fps:FP1986 hypothetical protein.
  
     0.678
Coch_2141
KEGG: fjo:Fjoh_4981 hypothetical protein.
  
     0.627
Coch_0623
Amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; KEGG: gfo:GFO_3378 amidophosphoribosyltransferase.
       0.623
Coch_0151
KEGG: gfo:GFO_2393 hypothetical protein.
  
     0.612
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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