Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0629PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_2139 SusD/RagB family protein. (540 aa)    
Predicted Functional Partners:
Coch_0630
KEGG: fjo:Fjoh_1211 hypothetical protein.
 
  
 0.945
Coch_0628
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1558 hypothetical protein.
 
     0.942
Coch_0362
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_1399 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.781
Coch_0626
Alpha-glucosidase; KEGG: bvu:BVU_1381 alpha-glucosidase.
 
  
 0.779
Coch_0631
PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; KEGG: gfo:GFO_2141 cytoplasmic alpha-amylase.
 
     0.708
Coch_0227
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_1763 hypothetical protein.
 
     0.705
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
  
    0.669
Coch_0226
PFAM: RagB/SusD domain protein; KEGG: bth:BT_1762 hypothetical protein.
  
    0.626
Coch_0932
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein.
 
   
 0.610
Coch_1739
KEGG: bth:BT_4200 hypothetical protein.
  
 
   0.602
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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