Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0630KEGG: fjo:Fjoh_1211 hypothetical protein. (348 aa)    
Predicted Functional Partners:
Coch_0629
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_2139 SusD/RagB family protein.
 
  
 0.945
Coch_0628
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1558 hypothetical protein.
 
     0.905
Coch_0631
PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; KEGG: gfo:GFO_2141 cytoplasmic alpha-amylase.
 
   
 0.701
Coch_0362
PFAM: alpha amylase catalytic region; Cyclomaltodextrinase; SMART: alpha amylase catalytic sub domain; KEGG: fjo:Fjoh_1399 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.696
Coch_0626
Alpha-glucosidase; KEGG: bvu:BVU_1381 alpha-glucosidase.
 
   
 0.644
Coch_0627
KEGG: gfo:GFO_3239 hypothetical protein.
       0.541
Coch_0772
KEGG: vha:VIBHAR_06129 uroporphyrinogen decarboxylase.
  
     0.515
Coch_1656
KEGG: fjo:Fjoh_2958 hypothetical protein.
  
  
 0.508
Coch_0258
KEGG: fjo:Fjoh_0885 hypothetical protein.
  
 
 0.490
Coch_0349
Hypothetical protein; KEGG: pdi:BDI_3271 clostripain-related protein.
 
    0.488
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.