STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0631PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; KEGG: gfo:GFO_2141 cytoplasmic alpha-amylase. (469 aa)    
Predicted Functional Partners:
Coch_1285
Alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.
 
 0.994
Coch_0626
Alpha-glucosidase; KEGG: bvu:BVU_1381 alpha-glucosidase.
 
  
  0.945
Coch_0928
KEGG: fjo:Fjoh_1400 hypothetical protein.
  
  
  0.917
Coch_0990
PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_02257 1,4-alpha-glucan branching enzyme.
  
  
  0.915
Coch_1394
KEGG: fjo:Fjoh_1209 hypothetical protein.
  
  
  0.915
Coch_0839
Kojibiose phosphorylase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: fjo:Fjoh_1401 kojibiose phosphorylase.
  
 
 0.912
Coch_1469
PFAM: glycoside hydrolase family 31; KEGG: bfs:BF1332 putative alpha-glucosidase II; Belongs to the glycosyl hydrolase 31 family.
    
 0.909
Coch_0985
Alpha-amylase; PFAM: glycoside hydrolase family 57; polysaccharide deacetylase; KEGG: pdi:BDI_0210 alpha-glycosidase.
    
  0.904
Coch_0629
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_2139 SusD/RagB family protein.
 
     0.708
Coch_0630
KEGG: fjo:Fjoh_1211 hypothetical protein.
 
     0.703
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.