Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0636Hypothetical protein. (164 aa)    
Predicted Functional Partners:
Coch_0635
KEGG: hypothetical protein.
       0.807
Coch_0637
Hypothetical protein.
       0.807
Coch_0638
Hypothetical protein.
       0.733
Coch_0632
Hypothetical protein.
       0.732
Coch_0633
PFAM: Mannosyl-glycoprotein endo-beta-N- acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: sdn:Sden_1311 peptidoglycan hydrolase.
       0.732
Coch_0634
KEGG: hypothetical protein.
       0.732
Coch_0639
KEGG: fjo:Fjoh_2071 hypothetical protein.
       0.720
Coch_0640
Hypothetical protein.
       0.633
Coch_0641
Hypothetical protein.
       0.551
Coch_0642
KEGG: lic:LIC10181 hypothetical protein.
       0.551
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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