Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0658KEGG: fps:FP0016 putative adhesin precursor SprB. (470 aa)    
Predicted Functional Partners:
Coch_0656
KEGG: fjo:Fjoh_0990 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib.
  
    0.773
Coch_0657
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: fjo:Fjoh_3447 oxidoreductase domain- containing protein.
       0.773
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
  
    0.773
Coch_1447
PFAM: Sporulation domain protein; KEGG: fps:FP0015 putative cell surface protein precursor SprD.
  
     0.770
Coch_1791
KEGG: fjo:Fjoh_3471 hypothetical protein.
  
     0.769
Coch_0033
PFAM: Hyalin; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
     0.768
Coch_1336
PFAM: Hyalin; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
     0.766
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
     0.759
Coch_1448
KEGG: mtp:Mthe_1690 hypothetical protein.
  
     0.732
Coch_0072
KEGG: fjo:Fjoh_4571 hypothetical protein.
  
     0.694
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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