Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0660PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fjo:Fjoh_0485 methyltransferase type 11. (234 aa)    
Predicted Functional Partners:
Coch_0661
TIGRFAM: PAS sensor protein; KEGG: sun:SUN_0744 hypothetical protein.
       0.773
Coch_1003
PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: gfo:GFO_2723 sec-independent protein translocase protein TatA/E.
  
    0.548
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.474
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
     0.437
Coch_0562
KEGG: gfo:GFO_3043 hypothetical protein.
 
   0.408
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: gfo:GFO_2831 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
    0.406
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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