Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0666PFAM: TonB-dependent receptor plug; KEGG: fjo:Fjoh_3802 TonB-dependent receptor, plug. (1101 aa)    
Predicted Functional Partners:
Coch_0667
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3801 RagB/SusD domain-containing protein.
 
     0.900
Coch_1739
KEGG: bth:BT_4200 hypothetical protein.
  
   0.810
Coch_1073
KEGG: fjo:Fjoh_2893 hypothetical protein.
  
     0.757
Coch_1071
KEGG: fjo:Fjoh_2891 hypothetical protein.
  
     0.725
Coch_1072
KEGG: fjo:Fjoh_2892 hypothetical protein.
  
     0.720
Coch_0268
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0207 hypothetical protein.
  
     0.703
Coch_1344
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1732 SusD/RagB family protein containing tetratricopeptide repeats.
  
     0.699
Coch_1388
KEGG: bfr:BF3612 hypothetical protein.
 
     0.693
Coch_0536
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_2446 hypothetical protein.
  
     0.676
Coch_1472
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
  
     0.673
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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