Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0673PFAM: O-methyltransferase domain protein; KEGG: pmu:PM1322 TcmP. (267 aa)    
Predicted Functional Partners:
purD
KEGG: fjo:Fjoh_1041 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.
 
      0.625
Coch_0727
KEGG: pgn:PGN_1350 hypothetical protein.
  
     0.617
Coch_0674
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ana:alr2575 transcriptional regulator.
 
     0.540
Coch_1308
PFAM: Abortive infection protein; KEGG: mmp:MMP0485 hypothetical protein.
  
     0.518
Coch_1305
KEGG: tde:TDE0536 hypothetical protein.
  
     0.504
Coch_0672
Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
    0.489
Coch_0753
Cobaltochelatase; PFAM: CobN/magnesium chelatase; KEGG: bfr:BF2689 protoporphyrin IX magnesium chelatase.
  
     0.464
Coch_1081
KEGG: bfs:BF2712 hypothetical protein.
  
     0.415
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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