Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0679PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gfo:GFO_0274 DegT-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (374 aa)    
Predicted Functional Partners:
Coch_0713
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gfo:GFO_1985 capsular polysaccharide biosynthesis protein.
 
  
 0.705
Coch_0677
Hypothetical protein.
       0.693
Coch_0678
PFAM: GCN5-related N-acetyltransferase; KEGG: bfr:BF3837 hypothetical protein.
       0.693
Coch_1109
PFAM: polysaccharide biosynthesis protein CapD; Polysaccharide biosynthesis domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: bfs:BF1909 putative LPS biosynthesis related dehydratase.
  
  
 0.649
Coch_0657
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: fjo:Fjoh_3447 oxidoreductase domain- containing protein.
 
  
 0.644
Coch_1111
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: fps:FP1286 FnlB protein involved in UDP-L- FucpNAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis).
  
  
 0.605
Coch_1202
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: bfs:BF1020 putative UDP-glucose-6 dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.523
Coch_2130
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.468
Coch_0680
PFAM: restriction endonuclease; KEGG: mhu:Mhun_0477 restriction endonuclease.
       0.460
Coch_1519
KEGG: bfr:BF4107 hypothetical protein.
  
  
 0.451
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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