Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0682KEGG: csc:Csac_2581 hypothetical protein. (63 aa)    
Predicted Functional Partners:
Coch_0681
KEGG: chy:CHY_2514 hypothetical protein.
       0.773
Coch_0683
Hypothetical protein.
       0.752
Coch_0680
PFAM: restriction endonuclease; KEGG: mhu:Mhun_0477 restriction endonuclease.
       0.718
Coch_0684
KEGG: cts:Ctha_1153 DNA methylase N-4/N-6 domain protein.
       0.682
Coch_0685
KEGG: tde:TDE0910 hypothetical protein.
       0.677
Coch_0686
KEGG: cch:Cag_0333 type II restriction endonuclease TdeIII.
       0.677
Coch_0687
PFAM: glycosidase PH1107-related; KEGG: fjo:Fjoh_2034 glycosidase, PH1107-related.
       0.677
Coch_0679
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gfo:GFO_0274 DegT-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.432
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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