Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0696PFAM: glycosyl transferase group 1; KEGG: pgn:PGN_1240 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Coch_0695
PFAM: glycosyl transferase family 2; KEGG: hip:CGSHiEE_03560 putative UDP-galactose-- lipooligosaccharide galactosyltransferase.
 
     0.801
Coch_0699
KEGG: nis:NIS_1259 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.797
Coch_0697
Hypothetical protein; KEGG: bfs:BF3686 putative polysaccharide polymerase.
       0.773
Coch_0698
KEGG: cno:NT01CX_1529 hypothetical protein.
       0.773
Coch_0704
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4- dehydrorhamnose reductase; KEGG: bfs:BF2600 DNTP-hexose dehydratase-epimerase.
  
  
 0.719
Coch_0703
PFAM: polysaccharide biosynthesis protein; KEGG: see:SNSL254_A2270 hypothetical protein.
  
    0.712
Coch_0705
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mae:Maeo_0386 NAD-dependent epimerase/dehydratase.
 
    0.681
Coch_0694
PFAM: glycosyl transferase group 1; KEGG: bfs:BF3455 putative LPS biosynthesis related glycosyltransferase.
 
    
0.675
Coch_0702
PFAM: glycosyl transferase family 2; KEGG: rpa:RPA4058 glycosyl transferase family protein.
  
    0.650
Coch_0700
KEGG: pdi:BDI_3624 hypothetical protein.
  
  
 0.648
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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