Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0701Hypothetical protein. (58 aa)    
Predicted Functional Partners:
Coch_0700
KEGG: pdi:BDI_3624 hypothetical protein.
       0.773
Coch_0702
PFAM: glycosyl transferase family 2; KEGG: rpa:RPA4058 glycosyl transferase family protein.
       0.773
Coch_0703
PFAM: polysaccharide biosynthesis protein; KEGG: see:SNSL254_A2270 hypothetical protein.
       0.773
Coch_0704
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4- dehydrorhamnose reductase; KEGG: bfs:BF2600 DNTP-hexose dehydratase-epimerase.
       0.773
Coch_0705
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: mae:Maeo_0386 NAD-dependent epimerase/dehydratase.
       0.773
Coch_0706
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: cli:Clim_0726 addiction module toxin, Txe/YoeB family.
       0.768
Coch_0707
Hypothetical protein.
       0.768
Coch_0708
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pfl:PFL_5096 lipopolysaccharide biosynthesis protein RfbH; Belongs to the DegT/DnrJ/EryC1 family.
       0.653
Coch_0695
PFAM: glycosyl transferase family 2; KEGG: hip:CGSHiEE_03560 putative UDP-galactose-- lipooligosaccharide galactosyltransferase.
       0.628
Coch_0696
PFAM: glycosyl transferase group 1; KEGG: pgn:PGN_1240 hypothetical protein.
       0.628
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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