Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0726Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: bfs:BF3437 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (446 aa)    
Predicted Functional Partners:
Coch_1569
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: fps:FP0415 1-pyrroline-5-carboxylate dehydrogenase.
  
 0.938
Coch_1100
TIGRFAM: cytochrome c nitrate reductase, small subunit; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pdi:BDI_0108 quinol oxidase.
   
 
 0.918
Coch_0960
PFAM: glutamine synthetase catalytic region; KEGG: fjo:Fjoh_2345 glutamine synthetase, catalytic region.
     
 0.915
Coch_0969
KEGG: fjo:Fjoh_0367 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
   
 0.913
Coch_1623
PFAM: aminotransferase class I and II; KEGG: fps:FP1696 aspartate aminotransferase.
  
 
 0.913
Coch_2047
PFAM: aminotransferase class I and II; KEGG: fps:FP0412 aspartate transaminase AspC1.
  
 
 0.913
Coch_1101
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: bth:BT_1417 cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
     
 0.912
glsA
PFAM: Glutaminase, core; KEGG: gfo:GFO_2730 glutaminase; Belongs to the glutaminase family.
     
 0.911
Coch_1738
2-oxoglutarate dehydrogenase, E1 subunit; KEGG: fjo:Fjoh_1256 alpha-ketoglutarate decarboxylase; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component.
   
 0.888
Coch_2155
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: fps:FP0706 dihydrolipoyl dehydrogenase.
  
 
 0.866
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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