Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0729KEGG: fps:FP1192 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Coch_0728
TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: fjo:Fjoh_0406 RNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.685
Coch_1224
KEGG: gfo:GFO_0996 hypothetical protein.
  
     0.623
Coch_1589
KEGG: fjo:Fjoh_2179 hypothetical protein.
  
     0.611
Coch_2101
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: fps:FP2334 hypothetical protein.
 
  
 0.590
Coch_0469
KEGG: fjo:Fjoh_1928 hypothetical protein.
 
     0.588
Coch_1848
KEGG: gfo:GFO_2761 secreted protein.
  
     0.547
Coch_1381
KEGG: gfo:GFO_3532 phosphoribosyltransferases family protein.
 
  
 0.544
Coch_0663
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: fjo:Fjoh_0995 DNA protecting protein DprA.
 
  
 0.542
Coch_0552
KEGG: fjo:Fjoh_2248 TonB-dependent receptor.
  
     0.540
Coch_1874
KEGG: fps:FP0585 hypothetical protein.
 
     0.536
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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