Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0752PFAM: GH3 auxin-responsive promoter; KEGG: fjo:Fjoh_1713 GH3 auxin-responsive promoter. (502 aa)    
Predicted Functional Partners:
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.718
Coch_1512
KEGG: gfo:GFO_1471 hypothetical protein.
 
 
 0.551
Coch_0085
KEGG: fjo:Fjoh_0132 hypothetical protein.
  
     0.533
Coch_0382
KEGG: fjo:Fjoh_2199 hypothetical protein.
  
     0.487
Coch_0215
KEGG: gfo:GFO_2766 FtsQ-like cell division protein.
  
     0.478
Coch_0008
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: fjo:Fjoh_4987 exonuclease, RNase T and DNA polymerase III.
  
     0.462
argS
KEGG: fjo:Fjoh_0251 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
 
    0.457
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
 
     0.443
Coch_0461
PFAM: protein of unknown function DUF450; KEGG: fps:FP1054 hypothetical protein.
  
     0.437
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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