Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0772KEGG: vha:VIBHAR_06129 uroporphyrinogen decarboxylase. (72 aa)    
Predicted Functional Partners:
Coch_0774
PFAM: protein of unknown function DUF1239; KEGG: gfo:GFO_2978 hypothetical protein.
 
     0.776
Coch_0773
KEGG: gfo:GFO_2977 membrane protein.
       0.773
Coch_0775
KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
       0.746
Coch_0776
KEGG: gfo:GFO_2980 conserved hypothetical protein, secreted.
       0.721
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.721
Coch_1189
KEGG: gfo:GFO_0159 hypothetical protein.
  
     0.554
Coch_0778
PFAM: protein of unknown function DUF214; KEGG: fps:FP0239 ABC transporter permease.
       0.548
Coch_0630
KEGG: fjo:Fjoh_1211 hypothetical protein.
  
     0.515
Coch_0771
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: fjo:Fjoh_2117 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.507
Coch_1957
KEGG: fps:FP1163 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
     
  0.500
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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